Plant MITE

SE2710012

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3345
Setaria italica
SE2710012
Tc1/Mariner
St6
scaffold_1:36656352-36656612
TA
TACTCCCTCCATTTCAAAATGCAGGTCGTTTAGTTT

Secondary structure and sequence

TSD TIR

5'

3'

    CCC   ATT        --C              TTTTCTC           CT   C                   A        CACC      --G   G  TCAAATTGGTTTAATTAAATCCATCT
TACT   TCC   TCAAAATG   AGGTCGTTTAGTTT       TTTAAGTCAAA  TCT TAGCTTTGACCGAGTTTAT GAAAAGTG    AACATC   GGA CA                          
||||   |||   ||||||||   ||||||||||||||       |||||||||||  ||| ||||||||||||||||||| ||||||||    ||||||   ||| ||                          T
ATGA   AGG   GGTTTTGC   TCCAGTAAATCAAA       GGATTCAGTTT  AGA ATTGAAACTGGTTCAAATG CTTTTTAT    TTGTAG   TTA GG                          
    ATA   CAT        AAA              -----TC           TC   C                   A        ATAA      ATA   -  TTTATTTACATGACAGTACTATATAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2710012

TACTCCCTCCATTTCAAAATGCAGGTCGTTTAGTTTTTTTCTCTTTAAGTCAAACTTCTCTAGCTTTGACCGAGTTTATAGAAAAGTGCACCAACATCGGGAGCATCAAATTGGTTTAATTAAATCCATCTTAATATATCATGACAGTACATTTATTTGGATTATAGATGTTAATATATTTTTCAGTAAACTTGGTCAAAGTTACAGACTTTTGACTTAGGCTAAACTAAATGACCTAAACGTTTTGGTACGGAATAAGTA

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