Plant MITE

SE2710016

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3349
Setaria italica
SE2710016
Tc1/Mariner
St3
scaffold_9:53482885-53483037
TA
TACTCCCTCCGTTCCAAATTGTAGGTCGTTTTGGCTTTTCAAGATAGATAGATTTTGCTCTGTATCTAGACATAATCTATATCTAGGTGCGTAGAAAAAAAATCATGTATCTAGAAAAGCCAAAACGACCTACACTTTGGAATGGAAGAAGTA

Secondary structure and sequence

TSD TIR

5'

3'

    C C           T                     A     G  A      -GC   --         C   A
TACT C TCCGTTCCAAA TGTAGGTCGTTTTGGCTTTTC AGATA AT GATTTT   TCT  GTATCTAGA ATA 
|||| | ||||||||||| ||||||||||||||||||||| ||||| || ||||||   |||  ||||||||| ||| T
ATGA G AGGTAAGGTTT ACATCCAGCAAAACCGAAAAG TCTAT TA CTAAAA   AGA  CGTGGATCT TAT 
    A A           C                     A     G  -      AAA   TG         A   C

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

SE2710016

Basic info.

Secondary structure and sequence

MITE cluster

Closed gene

>SE2710016