SE2750017

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3350
  • Setaria italica
  • SE2750017
  • PIF/harbinger
  • To5
  • scaffold_6:2301586-2301951
  • TTA
  • AGGGTCTGATTGGTTCCTTGC

Secondary structure and sequence

TSD    TIR
5'



3' 
TT               -    G ACCAC    GATACGAGCTCCCCGCATGCTACTTCGAGCTTAGGTGCTGGGCCTGACTTGCTGCGTGCAAAAAGCGTCGCGGAGCCTGGCTCCCGCGGTGCGGCCGAAACCTTCGTTTCCCCGGAGCCAGGCTCGCGCGGTGCATGGAGGAGCACATGGGC
  AGGGTCTGATTGGTT CCTT C     GCCG                                                                                                                                                        
  ||||||||||||||| |||| |     ||||                                                                                                                                                        A
  TCCCAGACTAACCAA GGAA G     CAGC                                                                                                                                                        
AT               A    G ----C    GTCGGACCGAGCGTGTCCAGTAGGTCCGGGGACAACCGGTCCGAGGGCTCCACGCGATCGCCCGAGTAACCAAACGCAAAGTTGCGTCGGTCCGGTCGTTCTCTTTAACTAACCGACGTACGTGCCGGTCGGCGAAAGAAAGGGACTGTACG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3