SE2750018

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3351
  • Setaria italica
  • SE2750018
  • PIF/harbinger
  • To1
  • scaffold_9:17386360-17386723
  • TCA
  • GGGGTGTTTGGATCTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TCA     ---     GA    ----------        ACTATAAAACTGAACTATAAAATTCATGTCACATCGAATATTCAGAGGCTAATTATGAGGACTAAACATGAGCTAATTATAAAACTAATTACACAGATGGAGGCTAATTCCAGAGACAATCTATTAAGCCTAATTAATCCATCATTAGC
   GGGGT   GTTTG  TCTT          TAGTTCGG                                                                                                                                                     
   |||||   |||||  ||||          ||||||||                                                                                                                                                     A
   CTCCG   CAAAC  AGAA          ATTTTAAG                                                                                                                                                     
  A     AGG     AA    ATCTTCGAGG        GCTAGTGTAGCTTACAAATCTATGATTAATCCTCATAATTTGTATCTGATTAATATTTTGGTTAACGTGTCTATCTCCGATTAAACGCTCTGCTTAGATAATTCGGATTAATTAGGTAGTAAACTGTTACGCCACGATGTCATTTGTAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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