SE2720020

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3353
  • Setaria italica
  • SE2720020
  • Mutator
  • M1
  • scaffold_9:2742018-2742567
  • TATTTTTTT
  • GGAAAAAGTCCATTTTACTCCCCTCACCTATCCACTTTGCCCGCTTAACCCCCTGAACAAAGTTTTGGCTCACTTTACTCCCCTGAACTATTTCATTTGGCCCAATCTACCCCCTAATTAGATTTCTCTTTTTTGTTTCTTTGTGTATGAGTTGAATTTTGAGTTCAAATTTTGTGAG

Secondary structure and sequence

TSD    TIR
5'



3'
TATTTTTTT          C                    CC      C                A        T                                  C                                                             G    A       G  CATATACAA          C             T    CTA      -               CATAGG    GAATTAATACGAAATTG
         GGAAAAAGTC ATTTTACTCCCCTCACCTAT  ACTTTG CCGCTTAACCCCCTGA CAAAGTTT GGCTCACTTTACTCCCCTGAACTATTTCATTTGG CCAATCTACCCCCTAATTAGATTTCTCTTTTTTGTTTCTTTGTGTATGAGTTGAATTTTGA TTCA ATTTTGT AG         AACATGATGC TTATGTTAGAAAA TATA   AGAATT TTTCATGGTTATTTT      TTAG                 
         |||||||||| ||||||||||||||||||||  |||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||         |||||||||| ||||||||||||| ||||   |||||| |||||||||||||||      ||||                 A
         CCTTTTTCAG TAAAATGAGGGGAGTGGATA  TGAAAC GGTGAATTGGGGGATT GTTTTAAA CCGAGTGAAATGAGGGGGTTTGATAAAGTAAACC GGTTAGGTGGGGGATTAATCTAAAGAGAAAAAACAAAGAAGCGCATGTTTAACTTAAAATT AAGT TAAAACA TC         TTGTACTACG GGTACAATTTTTT ATAT   TCTTAA AAAGTACTAATGAAA      ATGT                 
TTTTTTTAT          A                    AA      A                C        T                                  A                                                             A    C       G  AACTGAATA          A             C    -AA      T               ---AGC    CAAAACATATAGATTCT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End