SE2710022

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3355
  • Setaria italica
  • SE2710022
  • Tc1/Mariner
  • St3
  • scaffold_7:15673187-15673338
  • TA
  • TACTCCCTCCGTCCCAAATTACTATTCGTTTTGGCTTTTCTAGATACATAGCTTTTGCTATGCACCTAGAT

Secondary structure and sequence

TSD    TIR
5'



3' 
          -                C                A               A  CAC      ATAT
TACTCCCTCC GTCCCAAATTACTATT GTTTTGGCTTTTCTAG TACATAGCTTTTGCT TG   CTAGAT    
|||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||| ||   ||||||    A
ATGAGGGAGG TAGGGTTTAATGATAA CAAAACCGAAAAGATC ATGTATCGAAAACGA GC   GATCTG    
          G                A                C               C  ATA      CATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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