Plant MITE

SE2750023

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3356
Setaria italica
SE2750023
PIF/harbinger
To6
scaffold_3:24160106-24160421
TAA
AGGTAGTGTTTGGTTGGCT

Secondary structure and sequence

TSD TIR

5'

3'

TA               - -   --------------------CAAAT    -    ---------   T  TTACTGAAGGTAACGAATCCCATTACATATGTTTGGTTGCGGTGGTTTGTAATCAATTGACACTGTAATCGAATCCCTTACCTAAATAATATATATACAAGC
  AGGTAGTGTTTGGTT G GCT                         GTAA CGTA         ATC GA                                                                                                      
  ||||||||||||||| | |||                         |||| ||||         ||| ||                                                                                                      T
  TCTATCACAAACCAA C CGA                         GTCT ATGT         CTC CC                                                                                                      
AA               G A   TTCCATTACATTTGCATTTCCTTTA    A    CACATAAAC   -  ACCTTATCCACTAACGGGAGAAACAAACCAACGTGAGACCATTGCATTAGTCTAATGACACACCCACGATATAGACTAATGCCACCCCCTCCTCCCCATTGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2750023

TAAGGTAGTGTTTGGTTGGCTCAAATGTAACGTAATCTGATTACTGAAGGTAACGAATCCCATTACATATGTTTGGTTGCGGTGGTTTGTAATCAATTGACACTGTAATCGAATCCCTTACCTAAATAATATATATACAAGCTTGTTACCCCTCCTCCCCCACCGTAATCAGATATAGCACCCACACAGTAATCTGATTACGTTACCAGAGTGCAACCAAACAAAGAGGGCAATCACCTATTCCACCCTCCAAATACACTGTAATCTGATTTCCTTTACGTTTACATTACCTTAGCACGAACCAAACACTATCTAA

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