Plant MITE

SE2750028

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3361
Setaria italica
SE2750028
PIF/harbinger
To1
scaffold_2:31281423-31281776
TAA
AGGGGGTGTTTGGGAGGAGTGGGCTAAACTTTAGCCCTGTCATATCGGATGTTCGGATACTCATTAGGAGGACTAAACATAAGCTAATTACAAAACTAATTGCAGAACCCCTAGGCTAAATCGCGAGACGAATCTATTAAGCCTAATTA

Secondary structure and sequence

TSD TIR

5'

3'

TA                   T        C         -G  A           C       C        GAC    CA  A             C        G                                            AT    CATTAGTGAATGGTTACTGT
  AGGGGGTGTTTGGGAGGAG GGGCTAAA TTTAGCCCT  TC TATCGGATGTT GGATACT ATTAGGAG   TAAA  TA GCTAATTACAAAA TAATTGCA AACCCCTAGGCTAAATCGCGAGACGAATCTATTAAGCCTAATTA  CCAT                    
  ||||||||||||||||||| |||||||| |||||||||  || ||||||||||| ||||||| ||||||||   ||||  || ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||||                     
  TCCCCCACAAACCCTCCTC CCCGATTT AAATCGGGG  AG ATAGCTTACAA CCTGTGA TAATCCTC   ATTT  AT TGATTAATGTTTT ATTAATGT TTGGGGATCCGATTTAGCGCTCTGCTTAGATAATTCGGATTAAT  CAGT                    
AA                   C        A         GT  G           A       T        ATA    AG  C             A        G                                            -C    ACTAAACTGTTACACCACGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2750028

TAAGGGGGTGTTTGGGAGGAGTGGGCTAAACTTTAGCCCTGTCATATCGGATGTTCGGATACTCATTAGGAGGACTAAACATAAGCTAATTACAAAACTAATTGCAGAACCCCTAGGCTAAATCGCGAGACGAATCTATTAAGCCTAATTAATCCATCATTAGTGAATGGTTACTGTAGCACCACATTGTCAAATCATGACCTAATTAGGCTTAATAGATTCGTCTCGCGATTTAGCCTAGGGGTTGTGTAATTAATTTTGTAATTAGTCTAGATTTAATACTCCTAATTAGTGTCCAAACATTCGATAGGATGGGGGCTAAAATTTAGCCCCCTCCTCCCAAACACCCCCTAA

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