Plant MITE

SE2710030

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3363
Setaria italica
SE2710030
Tc1/Mariner
St8
scaffold_3:12302060-12302322
N.A.
TCCCTCCATTCCAAATTATAAGTCATTCCAAGAATCTTGGAGAGTCAAAGCATCTCAAGTTTGACCAAAATTATAGA

Secondary structure and sequence

TSD TIR

5'

3'

TAC                                                                     A     -  GAAAATT    AG        CA    A       ACTAT  AAATATAAT
   TCCCTCCATTCCAAATTATAAGTCATTCCAAGAATCTTGGAGAGTCAAAGCATCTCAAGTTTGACCAAA TTATA GA       ATAA  ATTTATGA  TCAA TAGGTAT     GA         
   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||       ||||  ||||||||  |||| |||||||     ||         T
   AGGGAGGTAGGGTTTAATATTCAGTAAGGTTCTTAGAACCTCTCAGTTTCGTAGAGTTCAAACTGGTTT AATAT CT       TATT  TAAATACT  AGTT ATTCATA     CT         
GTA                                                                     A     A  ATTATAT    -G        AC    G       GTAAT  AAGAAGTAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2710030

TACTCCCTCCATTCCAAATTATAAGTCATTCCAAGAATCTTGGAGAGTCAAAGCATCTCAAGTTTGACCAAAATTATAGAGAAAATTATAAAGATTTATGACATCAAATAGGTATACTATGAAAATATAATTGATGAAGAATCTAATGATACTTAGTTGACATCATAAATGTTATTATATTATCATATAAATTTGGTCAAACTTGAGATGCTTTGACTCTCCAAGATTCTTGGAATGACTTATAATTTGGGATGGAGGGAATG

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