SE2750031

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3364
  • Setaria italica
  • SE2750031
  • PIF/harbinger
  • To7
  • scaffold_4:10554937-10555235
  • TGA
  • AGGCCATTCTCAATGCAAGGTTTCAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TG      -----------        -   AG       ATTTATATTTTCAA    GCCACTTAAGCAAGAAGACATTTAGTTCATACATGAAATAGCTCACACAATGCAAAGTTTCATCTTGTGTTGTTTCCAAGACTACATGCAAGACACAAAGATCTT
  AGGCCA           TTCTCAAT GCA  GTTTCAT              GAGT                                                                                                         
  ||||||           |||||||| |||  |||||||              ||||                                                                                                          
  TCCGGT           AAGAGTTA CGT  CAAAGTA              CTGT                                                                                                         
AG      TAGAGCCCCAT        T   --       -------------C    TATTTACTCGACAGTACATCTGTTAAAACTACTGTACTGTGTGATAAATACTTCACTCTATTCTTTAATCAAAGTACCCCTACTTTGGTACAGATGTGACAAAGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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