SE2710032

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3365
  • Setaria italica
  • SE2710032
  • Tc1/Mariner
  • St3
  • scaffold_1:33248228-33248374
  • TA
  • TACTCCCTCTGTTTCAAATTGTCGTTTTGGCTTTTCTAGATACATGATTTTTGCTATGCACCTAAATATAGGCTATGTCTAGATACATAGCAAAATCTATGTATCTAGAAAAGCCAAAACGAC

Secondary structure and sequence

TSD    TIR
5'



3' 
                    ----                          AT          CAC   A     G
TACTCCCTCTGTTTCAAATT    GTCGTTTTGGCTTTTCTAGATACATG  TTTTGCTATG   CTA ATATA 
||||||||||||||||||||    ||||||||||||||||||||||||||  ||||||||||   ||| ||||| G
ATGAGGGGGGCAAGGTTTAA    CAGCAAAACCGAAAAGATCTATGTAT  AAAACGATAC   GAT TGTAT 
                    CATC                          CT          ATA   C     C
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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