Plant MITE

SE2710036

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3369
Setaria italica
SE2710036
Tc1/Mariner
St3
scaffold_9:4389623-4389773
TA
TACTCCCTCCGTTCCAAATTATAGGTCGTTTTGACTTTTCTAGATACATAGATATTATTATGCATCTAGACATAGGGTATATCTAAGTGCATAACAAAGTCTATGAATCTAATAAAGTCAAAACGACCTATAATTTGGGACGGAGGGAGTA

Secondary structure and sequence

TSD TIR

5'

3'

                                      TC     A       A  A        C    C   G
TACTCCCTCCGTTCCAAATTATAGGTCGTTTTGACTTT  TAGAT CATAGAT TT TTATGCAT TAGA ATA 
||||||||||||||||||||||||||||||||||||||  ||||| ||||||| || |||||||| |||| ||| G
ATGAGGGAGGCAGGGTTTAATATCCAGCAAAACTGAAA  ATCTA GTATCTG AA AATACGTG ATCT TAT 
                                      TA     A       A  C        A    A   G

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

SE2710036

Basic info.

Secondary structure and sequence

MITE cluster

Closed gene

>SE2710036