Plant MITE

SE2730038

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3371
Setaria italica
SE2730038
hAT
Hat4
scaffold_2:44102303-44102452
GCCACGTT
ACGTTCAGTGTTTTAAAGGTG

Secondary structure and sequence

TSD TIR

5'

3'

GCC    --TC               T    -     GTTCAGGCGGACCCAGCTCGCCTTGGGAAACCGGTCCGCCT
   ACGT    AGTGTTTTAAAGGTG CGCC TAGGC                                         
   ||||    ||||||||||||||| |||| |||||                                          
   TGCA    TCACAAAATTTCCGC TATT CGCTG                                         
  T    CCGA               -    C     GAACCTTTAGAAACGTGCGAAATAGCGGATCCGTTCGCTGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2730038

GCCACGTTCAGTGTTTTAAAGGTGTCGCCTAGGCGTTCAGGCGGACCCAGCTCGCCTTGGGAAACCGGTCCGCCTTGTCGCTTGCCTAGGCGATAAAGCGTGCAAAGATTTCCAAGGTCGCCTTATCGCCTTTAAAACACTAGCCACGTT

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