SE2710042

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3375
  • Setaria italica
  • SE2710042
  • Tc1/Mariner
  • St3
  • scaffold_1:29778341-29778491
  • TA
  • TACTCCCTCCGTCCCAAATTTTAGGTCGTTTTGGCATTTCTAGGTTCATAACTTTTGCTATG

Secondary structure and sequence

TSD    TIR
5'



3' 
      C             T            GC               A  T        CACA        C
TACTCC TCCGTCCCAAATT TAGGTCGTTTTG  ATTTCTAGGTTCATA CT TTGCTATG    TAGATATA 
|||||| ||||||||||||| ||||||||||||  ||||||||||||||| || ||||||||    |||||||| A
ATGAGG AGGCAGGGTTTAA ATCCAGCAAAAC  TAAAGATCTAAGTAT GA AATGATAC    ATCTATAT 
      T             C            GA               C  C        ATAG        C
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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