Plant MITE

SE2720043

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3376
Setaria italica
SE2720043
Mutator
M2
scaffold_7:27160357-27160680
CTTAAAAGA
CTTAAAAGAAGGGAATGTATCTGGTGCAAACCATCTACCTCGTGCAACCTTGAAAATTATGAATCAAGGCCACAAGATGCTAATCCAATGGATAGAGTTAGTGGTGGGATTATTTTGCAGTTAAGCATGCCCACCCGCCGGCCACTTTTGATGCA

Secondary structure and sequence

TSD TIR

5'

3'

     AA   AA                                          A                                          A                              A G  -                   -   -  GCACCT
  CTT  AAG  GGGAATGTATCTGGTGCAAACCATCTACCTCGTGCAACCTTG AAATTATGAATCAAGGCCACAAGATGCTAATCCAATGGATAG GTTAGTGGTGGGATTATTTTGCAGTTAAGC T CC CACCCGCCGGCCACTTTTG ATG CA      
  |||  |||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | || ||||||||||||||||||| ||| ||       
  GAA  TTC  CCCTTGCATAGACCACGTTTGGTAGATGGGGCACGTTGGAAC TTTGATACTTAGTTCCGGTGTTCTACGATTAGGTTACCTATC CAATCACCATCCTAATAAAACGTCAATTCG G GG GTGGGCGGCTGGTGAAAAC TAT GT      
AA   AA   --                                          C                                          C                              - G  A                   G   A  ACCTTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2720043

CTTAAAAGAAGGGAATGTATCTGGTGCAAACCATCTACCTCGTGCAACCTTGAAAATTATGAATCAAGGCCACAAGATGCTAATCCAATGGATAGAGTTAGTGGTGGGATTATTTTGCAGTTAAGCATGCCCACCCGCCGGCCACTTTTGATGCAGCACCTTTTCCATGATATGCAAAAGTGGTCGGCGGGTGAGGGGGCTTAACTGCAAAATAATCCTACCACTAACCCTATCCATTGGATTAGCATCTTGTGGCCTTGATTCATAGTTTCCAAGGTTGCACGGGGTAGATGGTTTGCACCAGATACGTTCCCCTTAAAAGAA

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