Plant MITE

SE2750045

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3378
Setaria italica
SE2750045
PIF/harbinger
To1
scaffold_9:1118664-1119017
TTA
AGGGGGTGTTTGGCAGGGAGGGGCTAAATTTTAGCCCCTGTCACATCGGATGTTTGGACACTAATTAGGAGTATTAAACATAGTCTAATTACAAAACTAATTGCACAACCCCTAGGCTAAATCGCGAGACGAATCTATTAAGCCTAATTAGTCCATGATTTG

Secondary structure and sequence

TSD TIR

5'

3'

TT             CA GG                   C          G         CA           T      C  -  T       C         T   C     C                                            G   T ACAAT     GCTA
  AGGGGGTGTTTGG  G  AGGGGCTAAATTTTAGCCC TGTCACATCG ATGTTTGGA  CTAATTAGGAG ATTAAA AT AG CTAATTA AAAACTAAT GCA AACCC TAGGCTAAATCGCGAGACGAATCTATTAAGCCTAATTAGTCCAT ATT G     GTGGT    
  |||||||||||||  |  ||||||||||||||||||| |||||||||| |||||||||  ||||||||||| |||||| || || ||||||| ||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |     |||||    C
  TCCCCCGCAAACC  C  TCCCCGATTTGAAATCGGG ACAGTGTAGT TGCAAGTCT  GATTAATCCTC TGATTT TA TC GATTAAT TTTTGATTA CGT TTGGG ATCCGATTTAGCGCTCTGCTTAGATAATTCGGATTAATTAGGTA TAA C     TACCA    
AT             TA AG                   -          G         AC           C      A  C  -       T         T   C     T                                            G   T --GCT     ATGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2750045

TTAGGGGGTGTTTGGCAGGGAGGGGCTAAATTTTAGCCCCTGTCACATCGGATGTTTGGACACTAATTAGGAGTATTAAACATAGTCTAATTACAAAACTAATTGCACAACCCCTAGGCTAAATCGCGAGACGAATCTATTAAGCCTAATTAGTCCATGATTTGACAATGTGGTGCTACAGTAACCATTCGCTAATGATGGATTAATTAGGCTTAATAGATTCGTCTCGCGATTTAGCCTATGGGTTCTGCTATTAGTTTTTTAATTAGCTCATATTTAGTCCTCCTAATTAGCATCTGAACGTGTGATGTGACAGGGCTAAAGTTTAGCCCCTGACATCCAAACGCCCCCTTA

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