SE2750048

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3381
  • Setaria italica
  • SE2750048
  • PIF/harbinger
  • To10
  • scaffold_3:20855392-20855777
  • TAA
  • AGGTCT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA         TGGATCGTCTAAAACTAATTTTTAATTGGACTAAAGTTTAGTTGGCTAAAAGTGAGCCAACACTTTTATATGACTAAAGTTTAGCTACCTTGTTTTGATCCTAGGACTAAAAGATAACTAAGAGATATATAAAATCCATGTTACTCTTGCTTTGGGGAGAGAAGAGAGAAAAGGGGAGAGAT
  AGGTCTGAT                                                                                                                                                                                      
  |||||||||                                                                                                                                                                                       
  TCCAGGATA                                                                                                                                                                                      
AA         GACCTCTGGGGTTGATTTGAAATCAACCGATTTTTTATCGAGATCCCTGAGGTTTGTACACCTGATTTTCCACTTGATTAAAATCAACGTAGGTGTGATTTTAAATCAAGTAATCAGGTGGTTTTGGTTGATTAAGCTCGATTGTACATCGTTTTCAGTGAAAACGGGTGGGGGTGGTTGGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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