SE2710050

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3383
  • Setaria italica
  • SE2710050
  • Tc1/Mariner
  • St3
  • scaffold_7:29298690-29298841
  • TA
  • TACTCCCTCCGTTTCAAATTGTAGGTCGTTTTGGCTTTTCTAGATTCATAGT

Secondary structure and sequence

TSD    TIR
5'



3' 
        C                                  ATT      ATATTA        C    C   C
TACTCCCT CGTTTCAAATTGTAGGTCGTTTTGGCTTTTCTAG   CATAGT      TTATGCAT TAGA ATA 
|||||||| ||||||||||||||||||||||||||||||||||   ||||||      |||||||| |||| ||| A
ATGAGGGA GCAAGGTTTAACATCCAGCAAAACTGAAAAGATC   GTATCA      GATACGTG ATCT TAT 
        A                                  CAC      -AAAAC        A    A   C
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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