Plant MITE

SE2710057

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3390
Setaria italica
SE2710057
Tc1/Mariner
St5
scaffold_2:45096801-45096951
TA
TACTCCCTCCGTCCCAAATTACTATTCGTTTTGACTTTTGTAGGTACATAACTTTTGTTATGCACCTAGATATATATTATGTCTAGATACATAGCAAAAGTTATGCATCTGGAAAAGCCAAAACGAATAGTAATTTGGGACGGAGGGAGTA

Secondary structure and sequence

TSD TIR

5'

3'

                                 A     G     A                CAC         T
TACTCCCTCCGTCCCAAATTACTATTCGTTTTG CTTTT TAGGT CATAACTTTTGTTATG   CTAGATATA 
||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||   ||||||||| A
ATGAGGGAGGCAGGGTTTAATGATAAGCAAAAC GAAAA GTCTA GTATTGAAAACGATAC   GATCTGTAT 
                                 C     G     C                ATA         T

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

SE2710057

Basic info.

Secondary structure and sequence

MITE cluster

Closed gene

>SE2710057