SE2750069

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3402
  • Setaria italica
  • SE2750069
  • PIF/harbinger
  • To12
  • scaffold_5:46235626-46235896
  • CTA
  • GGCCTTGTTTAGTT

Secondary structure and sequence

TSD    TIR
5'



3' 
CTA    T         G    ACTTTGGGGTGTCAAAATTCCTGTAGCAATACTGTAGCGTTTCGTTTGTATTTGTGAATTATTGTCCAAATATTGACTAATTAGGCTTAAAAGATTCGTCTCGCAAAGTACAAC
   GGCC TGTTTAGTT CCCA                                                                                                                  
   |||| ||||||||| ||||                                                                                                                   
   CCGG ACAAATCAA GTGA                                                                                                                  
ATC    T         -    GGTTTTAGGGTTGAAACTGTGATACGTTTTTCTTCTAAGGGGTAGTGTAGTTTGAACGCCATGTACGTACCTCATGACTTACATCTACTTTAGTTTTTGATTAACGTGTCAAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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