Plant MITE

SE2710070

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3403
Setaria italica
SE2710070
Tc1/Mariner
St2
scaffold_3:7635034-7635294
TA
TACTCCCTCCGTTCCTGTTTATAAGGCGT

Secondary structure and sequence

TSD TIR

5'

3'

                             --  -  TGAC      C    - CCTAAAATAGACTTTGACCATTTATTTATCTTATATTATATTGTTTATGGTTATAAACTTATAGTCATTGGAGAGTACATTT
TACTCCCTCCGTTCCTGTTTATAAGGCGT  GG TG    ATGGCA GGTC T                                                                                  
|||||||||||||||||||||||||||||  || ||    |||||| |||| |                                                                                   
ATGAGGGAGGCAAGGACAAATATTCCGCG  TG GT    ATAGTT CTAA T                                                                                  
                             TG  T  ----      -    G TTCAAAGGTTAGAAACTGGTTATTAAATCGGTTGTAAAAAAAATAAAACATTACATTTAAACTGTACCAACCTAAACATTAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2710070

TACTCCCTCCGTTCCTGTTTATAAGGCGTGGTGTGACATGGCACGGTCTCCTAAAATAGACTTTGACCATTTATTTATCTTATATTATATTGTTTATGGTTATAAACTTATAGTCATTGGAGAGTACATTTGATTACAAATCCAACCATGTCAAATTTACATTACAAAATAAAAAAAATGTTGGCTAAATTATTGGTCAAAGATTGGAAACTTTGAATCTTGATATGTGTGTGCGCCTTATAAACAGGAACGGAGGGAGTA

Copy Cancel