SE2750072

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3405
  • Setaria italica
  • SE2750072
  • PIF/harbinger
  • To1
  • scaffold_7:24099004-24099354
  • TAA
  • AGG

Secondary structure and sequence

TSD    TIR
5'



3'
TA   TCTG           CC               CCC        A                 T  A                                    C                G                                G   T AC     A    TA
  AGG    GTTTGGTTCCT  TGCTTATTTTTAGCA   GTCACATC AATGTTTAGATACTAAT AG AGTATTAAACGTAGACTATTTACAAAACCCATTATA AAGTGGAGGCTAAACG CGAGACGAATCTATTAAGCCTAATTAGTCCAT ATT G  AATGT TTGC  
  |||    |||||||||||  |||||||||||||||   |||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||| |  ||||| ||||   
  TCC    CAAACCAAGGG  ACGAATAAAAATCGT   CAGTGTAG TTACAAATCTATGATTA TC TCATAATTTGTATCTGATAAATGTTTTGGGTAATGT TTCACCTCCGATTTGC GCTCTGCTTAGATAATTCGGATTAATTAGGTA TAA C  TTACA AATG  
AA   CCCG           AA               ACA        C                 C  C                                    A                G                                G   T GT     -    AC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End