SE2750074

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3407
  • Setaria italica
  • SE2750074
  • PIF/harbinger
  • To9
  • scaffold_4:16341134-16341347
  • TAA
  • AGGCCCTGTTTGTAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA               AC   TTTCCTAGCCACGCTTAGATTATAATCTAAGCGAAGATTTTCTCGCTTCTCGCTTTTCGCTTCTCGTAGTTCAAATCGTTGAAGCG
  AGGCCCTGTTTGTAT  GCT                                                                                      
  |||||||||||||||  |||                                                                                       
  TCCGGGGCAAACATA  GGC                                                                                      
AA               --   GAATATTCGCCGAATAGCCACCTTTATTCGCTCTTAGGGCGGTTTGCGAAACGAATAAAGGTGGCTAAGAGCGAATACACCATTCG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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