SE2750081

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3414
  • Setaria italica
  • SE2750081
  • PIF/harbinger
  • To1
  • scaffold_6:28309243-28309592
  • TAA
  • AGGGGGTGTTTGTTTTTTAGTGCCTCCTAAAATTTCTATCACATCGAATGTTTAGATACTAATTAGGAGTATTAAATATAGACTAATTACAAAATCAATTGCACAGATGGAGACTAATTTGCGAGACGAATCTATTAAGCCTAATTAGTTCATGATTTGACAATGTGATGC

Secondary structure and sequence

TSD    TIR
5'



3'
TA            -T       T              C                TA  TA          GT         -  A       C     C                A                                        G   T -   A   GA   TA
  AGGGGGTGTTTG  TTTTTAG GCCTCCTAAAATTT TATCACATCGAATGTT  GA  CTAATTAGGA  ATTAAATAT AG CTAATTA AAAAT AATTGCACAGATGGAG CTAATTTGCGAGACGAATCTATTAAGCCTAATTAGTTCAT ATT G ACA TGT  TGC  
  ||||||||||||  ||||||| |||||||||||||| ||||||||||||||||  ||  ||||||||||  ||||||||| || ||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| | ||| |||  |||   
  TCCCCCACAAAC  AGAAATT TGGAGGATTTTAAA ATAGTGTAGCTTATAA  CT  GATTAATCCT  TGATTTATA TC GATTAAT TTTTG TTAATGTGTCTACCTC GATTAAGTGCTCTGCTTAGATAATTCGGATTAATTAGGTA TAA C TGT ACA  ATG  
AA            CT       C              T                CC  CC          AC         C  -       A     A                C                                        G   T G   -   -A   AC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End