SE2750083

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3416
  • Setaria italica
  • SE2750083
  • PIF/harbinger
  • To1
  • scaffold_7:27830401-27830752
  • TAA
  • AGGGGCTGTTTGGATACGAGGTGCTAAACTTTAACAGTGTCACATCGGATGTTCGGATGCTAATTAGGAGGACTAAACATGAGCTAATTATAAAACTAATTGCAGA

Secondary structure and sequence

TSD    TIR
5'



3'
TA     C       - T   AGG  C    C       -G                C                G                                 G ACCTTGTGC                                 A     C   -A    -A    TACT
  AGGGG TGTTTGG A ACG   TG TAAA TTTAACA  TGTCACATCGGATGTT GGATGCTAATTAGGAG ACTAAACATGAGCTAATTATAAAACTAATTGCA A         TAATTCGCGAGACGAATCTATTAAGCCTAATTA TCCAT ATT  GCAA  TGGT    
  ||||| ||||||| | |||   || |||| |||||||  |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |         ||||||||||||||||||||||||||||||||| ||||| |||  ||||  ||||    G
  TCCCC ACAAACC T TGT   AC ATTT AAATTGT  ACAGTGTAGCCTACAA CCTATGATTAATCCTC TGATTTGTATTCGATTAATGTTTTGATTAACGT T         ATTAAGCGCTCTGCTTAGATAATTCGGATTAAT AGGTA TAA  TGTT  ACCA    
AA     C       C T   -GG  A    C       GG                A                A                                 G CTACCTAAT                                 C     C   AC    AC    CGAT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End