SE2750086

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3419
  • Setaria italica
  • SE2750086
  • PIF/harbinger
  • To1
  • scaffold_9:37440351-37440701
  • TAA
  • AGGGGGTGTTTGGATCCTTAAGCTAAAGT

Secondary structure and sequence

TSD    TIR
5'



3'
TA             A  C   -----A        CTAG   A       AC    C    GAG            GAG    C  -  G   A              A  C       A       C                  T        A   A     A C   ------    TAC
  AGGGGGTGTTTGG TC TTA      GCTAAAGT    TCC TGTCACA  GAAT TTTG   ACTAATTAGGAG   TAAA AT GA TAA TTATAAAACTAATT CA GGATGGA GCTAATT GCGAGACGAATTTATTAA CCTAATTA TTC TGATT G ACA      TGTT   
  ||||||||||||| || |||      ||||||||    ||| |||||||  |||| ||||   ||||||||||||   |||| || || ||| |||||||||||||| || ||||||| ||||||| |||||||||||||||||| |||||||| ||| ||||| | |||      ||||    
  TCCCCCACAAACC AG AAT      TGATTTCA    AGG ACAGTGT  CTTA AAAT   TGATTAATCCTT   ATTT TA CT ATT AATGTTTTGGTTAA GT TCTACTT CGATTAA CGCTCTGCTTAAATAATT GGGTTAAT AGG ACTAA C TGT      ACGA   
AA             A  A   CAGGCC        ----   -       AA    C    ATA            ATA    A  T  G   -              C  A       C       A                  C        C   C     A -   TACACT    TGT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End