Plant MITE

SE2710087

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3420
Setaria italica
SE2710087
Tc1/Mariner
St12
scaffold_5:7489902-7490162
N.A.
CGTCCAAAAAAGAATGCAACTCTCGCTT

Secondary structure and sequence

TSD TIR

5'

3'

TACTCCCTC     A             C        CCCAAAA      C  A                -      CAAAAT        -C       -GTA   AATAAATAGTA       AATC   T  TAT
         CGTCC AAAAAGAATGCAA TCTCGCTT       AGTCAA CA TTTTAAATTTGATCAA TTTATA      AGTACTAA  ATTTATG    CAA           ATAGATT    ATG AA   
         ||||| ||||||||||||| ||||||||       |||||| || |||||||||||||||| ||||||      ||||||||  |||||||    |||           |||||||    ||| ||    
         GTAGG TTTTTCTTACGTT AGAGCGAA       TCAGTT GT AAAGTTTAAACTAGTT AAATAT      TTATGATT  TAAGTGC    GTT           TATCTAA    TAC TT   
ACGCATAAA     A             T        AAACTCA      T  C                T      TTTCTT        TA       AGAG   -----------       ATCA   -  TTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2710087

TACTCCCTCCGTCCAAAAAAGAATGCAACTCTCGCTTCCCAAAAAGTCAACCAATTTTAAATTTGATCAATTTATACAAAATAGTACTAACATTTATGGTACAAAATAAATAGTAATAGATTAATCATGTAATATATTTTCATACTAAATCTATTTGGAGACGTGAATATTTAGTATTTTCTTTTATAAATTTGATCAAATTTGAAACTGTTTGACTACTCAAAAAGCGAGATTTGCATTCTTTTTAGGATGAAATACGCA

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