SE2750094

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3427
  • Setaria italica
  • SE2750094
  • PIF/harbinger
  • To6
  • scaffold_1:31977453-31977767
  • TTA
  • AGATAGTGTTTGGTTCGTGCTAAGGTAATGTA

Secondary structure and sequence

TSD    TIR
5'



3'
TT  A            CGT   --AAG        AACGCAAAGGAA   A      AGTGTATT         AATAGG G     CCTCTT           ACTC    AAC        --AT       --     G  A       TTACG  --GG G   GAG GG
  AG TAGTGTTTGGTT   GCT     GTAATGTA            ATC GATTAC        TGGAGGTGG      T ATTGC      TGTTTGGTTGC    TGGT   GTAATCAG    TACTGTG  TGAGT CT TATCTGA     GT    G GAG   G  
  || ||||||||||||   |||     ||||||||            ||| ||||||        |||||||||      | |||||      |||||||||||    ||||   ||||||||    |||||||  ||||| || |||||||     ||    | |||   |  T
  TC ATCACAAACCAA   CGA     CATTGCAT            TAG CTAATG        ACTTCCATT      G TAATG      ACAAACCAACG    ACCA   CATTAGTT    GTGACAT  GCTTA GG ATGGATT     TA    T TTC   C  
AT  C            --T   GTTTA        ------------   A      --------         GTTTAG G     ---TAT           --CC    -AA        AACT       TA     G  A       TATTA  GATA G   AAA AA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End