Plant MITE

SE2710096

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3429
Setaria italica
SE2710096
Tc1/Mariner
St3
scaffold_5:10506412-10506563
TA
TACTCCCTCCGTCCCAATTTACAGGTCGTTTTGGCTTTTCTAG

Secondary structure and sequence

TSD TIR

5'

3'

            CC   T   C    C                ---      AATTTTAGCTATGCACCTAGATATA
TACTCCCTCCGT  CAA TTA AGGT GTTTTGGCTTTTCTAG   GTGCAT                         
||||||||||||  ||| ||| |||| ||||||||||||||||   ||||||                         T
ATGAGGGAGGCA  GTT AAT TCCA CAAAACCGAAAAGATC   GTATCA                         
            AA   T   C    A                TAA      TAAATGATACATAGATCTGTATTCG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2710096

TACTCCCTCCGTCCCAATTTACAGGTCGTTTTGGCTTTTCTAGGTGCATAATTTTAGCTATGCACCTAGATATATGCTTATGTCTAGATACATAGTAAATACTATGAATCTAGAAAAGCCAAAACAACCTCTAATTTGAAACGGAGGGAGTA

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