SE2750099

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3432
  • Setaria italica
  • SE2750099
  • PIF/harbinger
  • To1
  • scaffold_9:9036715-9037068
  • TTA
  • AGGGGTGTTTGATGCTGAAGCTAAA

Secondary structure and sequence

TSD    TIR
5'



3'
TT             G    A      GTTTAAAG      CCG                CG              TGAC    C   A             C     G  G                                            A     C   -A    ----A    TAC
  AGGGGTGTTTGAT CTGA GCTAAA        TTTAGT   TGTCACGTCGGATATT  GATGTTAATTAGGA    TAAA ATG GCTAATTACAAAA TAATT CA AACCCTTAGGCTAAATCGCGAGACGAATTTATTAAGCCTAATTA TCCAT ATT  GCGA     TGTT   
  ||||||||||||| |||| ||||||        ||||||   ||||||||||||||||  ||||||||||||||    |||| ||| ||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||| |||  ||||     ||||    
  TCCCCACAAACTA GGCT CGATTT        AAATCG   ACAGTGTAGTTTATAA  CTGTGATTAATCCT    ATTT TAT CGATTAATGTTTT ATTAA GT TTGGGGATCCGATTTAGCGCTCTGCTTAGATAATTTGGATTAAT AGGTA TAA  TGTT     ACGA   
AT             G    -      -------A      AAG                -A              CATA    A   C             A     A  G                                            C     C   AC    ATACC    TGT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End