SE2750100

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3433
  • Setaria italica
  • SE2750100
  • PIF/harbinger
  • To17
  • scaffold_9:7517087-7517429
  • TAA
  • AGGGCATGTACAACAGT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA              A  ----  -     CTGCTGTCTCTAAGTTCTTGGAATTTACAACATAGACGGCTAAATAGACAGCTCGTACAACCCACAGACAGCTGCTATCTGTTTTGGCTGTCAACAAATCATTAAATGTTTGCATGCCAGCCGGTGTCGACGAGGAGGCGACG
  AGGGCATGTACAAC GT    GA GACAG                                                                                                                                               
  |||||||||||||| ||    || |||||                                                                                                                                                
  TCCCGTGCATGTTG CA    CG CGGCA                                                                                                                                               
AA              C  GCAC  T     GCAGAGTGCTGCCTTCAAAACGTTTTAGGGGGAGCGAAGTGACGTCATTGACTTCTCTCTCTCCCTTCGGCAGCGCACCCCTCTGCTGCCGTTCGCGAGCACGAGGGTCCGCTTCTTCTGCCGACCGACGCGCAACATGCCTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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