SE2710104

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3437
  • Setaria italica
  • SE2710104
  • Tc1/Mariner
  • St3
  • scaffold_6:28659574-28659724
  • TA
  • TACTCCCTCCGTCCCAAATTATAGGTCGTTTTGACTTTATTAGATTCATAAATTTTGTTATGCACTTAGATATACCCTATGTCTAGATGCATAATAATATCTATGTATCTAGAAAAGCCAAAACGACCTATAATTTGGAACGGAGGGAGTA

Secondary structure and sequence

TSD    TIR
5'



3' 
            C                    A    A      T    A  T          C         C
TACTCCCTCCGT CCAAATTATAGGTCGTTTTG CTTT TTAGAT CATA AT TTGTTATGCA TTAGATATA 
|||||||||||| |||||||||||||||||||| |||| |||||| |||| || |||||||||| ||||||||| C
ATGAGGGAGGCA GGTTTAATATCCAGCAAAAC GAAA GATCTA GTAT TA AATAATACGT GATCTGTAT 
            A                    C    A      T    C  T          A         C
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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