SE2750109

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3442
  • Setaria italica
  • SE2750109
  • PIF/harbinger
  • To18
  • scaffold_9:50635489-50635697
  • TCA
  • AGGGCCAGTTTGGTAGGGCTCC

Secondary structure and sequence

TSD    TIR
5'



3' 
TC                      A        TAAAATGAGAAGGAGCTGGAGGAGCCACTTTTTTTGGCTCTGGCTTCTCCATATAAAACGGCCCCGGCTCCT
  AGGGCCAGTTTGGTAGGGCTCC GCTCCTCC                                                                        
  |||||||||||||||||||||| ||||||||                                                                         
  TCCCGGTCAAACCATCCCGAGG TCGAGACC                                                                        
AC                      -        GAAGAGGACGCCGAGGTCGACTTCGGGATGGTTTGTCAAACCAGTTTTTGCCGAGGTGGGAACCTCGTGATC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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