SE2720114

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3447
  • Setaria italica
  • SE2720114
  • Mutator
  • M4
  • scaffold_8:6296029-6296450
  • TACGGATAG
  • CGGATAGAGCTCTTTGACGGTACACAATACTACC

Secondary structure and sequence

TSD    TIR
5'



3'
 TA G A           G     A            -----         ---------- GTTAGAAAA GACTCGTATGTAAGGATCCGACGGTTGAGATTAATTGTATACTACTAAAACCTTAAGCTGTAGTATAGGAAGTACGCATGAGTAGTATGAGTAGTATAGGGGTATGATTGGAATTATATAAAATGGCATTGTTGGGAGATCGACGGACGCCG
   C G TAGAGCTCTTT ACGGT CACAATACTACC     TTATACTAC          T         G                                                                                                                                                        
   | | ||||||||||| ||||| ||||||||||||     |||||||||          |         |                                                                                                                                                         
   G C ATCTCGAGAAA TGCCA GTGTTATGATGG     CATCATATC          C         A                                                                                                                                                        
ATA G -           A     C            TTCAC         TCATACCCGA --------- AAAAACCATGCCCATGTTAACATTAATCGTGTTGTATATAATAAGCCATTAAAAAAAAGGTGTGCCGTAAAAGGACGAGCCGACGGCGGTGGCGGACGTACGCCGCGGGCGGCTAGACTGTCGCGAGCCGGTGGCGGTGGCGAGCGTGTGAC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End