SE2730117

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3450
  • Setaria italica
  • SE2730117
  • hAT
  • Hat5
  • scaffold_4:4473401-4473579
  • CTTACAAT
  • CAATGTACGAAATAGCGGGCTATAGCGAG

Secondary structure and sequence

TSD    TIR
5'



3' 
CTTACAAT                      -------     -     ATAGCGGCGCTATAGCGTTTGATGCTAACTGCCGCTACAACAGTG
        CAATGTACGAAATAGCGGGCTA       TAGCG AGGCT                                             
        ||||||||||||||||||||||       ||||| |||||                                             T
        GTTACATGTTTTATCGTCCGAT       ATCGC TCTCG                                             
TAACATTC                      ACTCTAA     A     ACACGAATTGGCGATATCGTGGCGATATCGGGCGATTAATCATAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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