SE2720118

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3451
  • Setaria italica
  • SE2720118
  • Mutator
  • M4
  • scaffold_5:16101724-16102097
  • AATAAATAG
  • GAGCTCTTTTACGTTGCACAATAC

Secondary structure and sequence

TSD    TIR
5'



3' 
AATAAATA             T                T     G  TATTTAGTGGTATATAGTATATAGAAGATCTAACCATCCATTATTATGGATAATTTAGTAACTATTATATTGTAGAAAATGATGTTTTAAATGGAATGATCTTTTGGACTTTATGCTAGTGTCAAAAAAATATGACAGTGA
        GAGCTCTTTTACG TGCACAATACTACTAT TACTG TA                                                                                                                                             
        ||||||||||||| |||||||||||||||| ||||| ||                                                                                                                                              
        CTCGAGAAAATGC ACGTGTTATGATCTGA TATGA TT                                                                                                                                             
ATAAATAA             C                -     -  ACAAGCTTTTCCTGATCATATTTTTTGTAGGCTACCAGTTCTAATTAAAATATGAAAACTTTTGAAGTAGATACCATACTCATCATATGTATACATCATATCCATCATATTCCCATACTACCTTTTTTTTATTTTAACTGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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