Plant MITE

SE2710121

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3454
Setaria italica
SE2710121
Tc1/Mariner
St8
scaffold_8:24030186-24030448
TA
TACTCCCTCCGTTCCAAATTATAAGTCATTCCAACTTTCTTGGAGAGTCAAAGCAT

Secondary structure and sequence

TSD TIR

5'

3'

                                                    G   -CTCAA           T     CAAT   G   TAACATTC   A    A        -CCAT   TTTCTTCATT
TACTCCCTCCGTTCCAAATTATAAGTCATTCCAACTTTCTTGGAGAGTCAAA CAT      GTTTGACCAAA TTATA    AAA TGC        ATG TATC AATAGGTA     TGG          
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||      ||||||||||| |||||    ||| |||        ||| |||| ||||||||     |||           
ATGAGGGAGGCAAGGTTTAATATTCAGTAAGGTTGAAAGAACCTCTCAGTTT GTA      CAAACTGGTTT AATAT    TTT ATG        TAC GTGG TTATCTAT     ACT          
                                                    -   AAAATA           T     CTCT   A   TTTTCAAA   C    C        ATGAT   TTTATATAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2710121

TACTCCCTCCGTTCCAAATTATAAGTCATTCCAACTTTCTTGGAGAGTCAAAGCATCTCAAGTTTGACCAAATTTATACAATAAAGTGCTAACATTCATGATATCAAATAGGTACCATTGGTTTCTTCATTAAATATATTTTCATAGTATATCTATTCGGTGCCATAAACTTTTGTAATTTTCTCTATAATTTTGGTCAAACATAAAAATGTTTGACTCTCCAAGAAAGTTGGAATGACTTATAATTTGGAACGGAGGGAGTA

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