Plant MITE

SE2710127

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3460
Setaria italica
SE2710127
Tc1/Mariner
St15
scaffold_2:40969293-40969554
TA
TACTCTCTCCGTCTTGAAATACAAGGCATCCTAG

Secondary structure and sequence

TSD TIR

5'

3'

       T        A              T  -----------A    TTA      ---  GTAGGAATAGCAAAAGACGCATGTACTCCTGAGACAACGGTAGTTGTAGATAACAAGGAACTTATTTTTAGTAA
TACTCTC CCGTCTTG AATACAAGGCATCC AG            GATT   GGATAT   TA                                                                          
||||||| |||||||| |||||||||||||| ||            ||||   ||||||   ||                                                                          T
ATGAGGG GGTAGGAC TTATGTTCCGTAGG TC            TAGG   TTTATG   CG                                                                          
       C        A              T  GCAAGTTTTAAA    -AG      TTC  CAATATCCGTATAAACCTACTAACAGTAAATTAAGAAAGATATTAATTGTTATATTCCACCGACTAACCACCTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2710127

TACTCTCTCCGTCTTGAAATACAAGGCATCCTAGAGATTTTAGGATATTAGTAGGAATAGCAAAAGACGCATGTACTCCTGAGACAACGGTAGTTGTAGATAACAAGGAACTTATTTTTAGTAATATCCACCAATCAGCCACCTTATATTGTTAATTATAGAAAGAATTAAATGACAATCATCCAAATATGCCTATAACGCCTTGTATTTGAGGATAAATTTTGAACGCTTGGATGCCTTGTATTACAGGATGGCGGGAGTA

Copy Cancel