SE2710129

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3462
  • Setaria italica
  • SE2710129
  • Tc1/Mariner
  • St3
  • scaffold_9:55840330-55840480
  • TA
  • TACTCCCTCCGTTCCAAATTGTAGGTCGTTTTGACTTTTCTAGGTTCATAGATATTATTATGCAATTAGACATACACTATATCTAGATGCATAATAATATCTATGAATCTAAAAAAGCTAAAATGACCTACAATTTGGAACGGAGGGAGTA

Secondary structure and sequence

TSD    TIR
5'



3' 
                                 A     C                        A     C   C
TACTCCCTCCGTTCCAAATTGTAGGTCGTTTTG CTTTT TAGGTTCATAGATATTATTATGCA TTAGA ATA 
||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||| ||| A
ATGAGGGAGGCAAGGTTTAACATCCAGTAAAAT GAAAA ATCTAAGTATCTATAATAATACGT GATCT TAT 
                                 C     A                        A     A   C
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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