SE2720138

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3471
  • Setaria italica
  • SE2720138
  • Mutator
  • M6
  • scaffold_1:8778395-8778793
  • TTTAGAAAT
  • TTTAGAAATGGGAACATATCTAGTAGAAACCACACCCTTCATGAAAACCAGTGCAAACCACGTAAAAAAGTCATATAAATTCACCAATAAAATCACACGTATAGATAATATGATGATGAACAATCTTGTAAAATATCTTGTCCAAACTCGACTTCGTTTGTGAGATATAAAAATAA

Secondary structure and sequence

TSD    TIR
5'



3'
         AAT                                        A          -C       --A   ATA         C  T            A     --A           A   A                                                     CAAATACCAA   TGAAAGTTGTCCA
   TTTAGA   GGGAACATATCTAGTAGAAACCACACCCTTCATGAAAACC GTGCAAACCA  GTAAAAA   GTC   TAAATTCAC AA AAAATCACACGT TAGAT   ATATGATGATG ACA TCTTGTAAAATATCTTGTCCAAACTCGACTTCGTTTGTGAGATATAAAAATAA          GGC             
   ||||||   |||||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||   |||   ||||||||| || |||||||||||| |||||   ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||          |||             A
   AGATTT   CCCTTGTATAGGTCATCTTTGGTGTGGGAAGTACTTTTGG CACGTTTGGT  TATTTTT   CAG   ATTTAAGTG TT TTTTAGTGTGTA ATCTA   TATACTACTAT TGT GGAACATTTTATAGAACAGGTTTGAGCTGAAGCAAACACTCTATATTTTTATT          CTA             
TAA      ---                                        A          TT       AAG   ---         T  T            C     CTA           G   A                                                     --------TT   AGATTATTTAGTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End