Plant MITE

SE2710139

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3472
Setaria italica
SE2710139
Tc1/Mariner
St3
scaffold_4:1900815-1900964
TA
TACTCCCTCCGTCCCAAATTACTATTCGGTCTGGTTTTTCTAGATACATAGCTTTTGCTATGGACCTAGATAT

Secondary structure and sequence

TSD TIR

5'

3'

                      T     GTC              A                GAC        AT
TACTCCCTCCGTCCCAAATTAC ATTCG   TGGTTTTTCTAGAT CATAGCTTTTGCTATG   CTAGATAT  
|||||||||||||||||||||| |||||   |||||||||||||| ||||||||||||||||   ||||||||   
ATGAGGGAGGCAGGGTTTAATG TAAGT   ATCAAAAAGATCTA GTATTGAAAACGATGC   GATCTGTA  
                      T     AAA              C                ATA        TG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

SE2710139

Basic info.

Secondary structure and sequence

MITE cluster

Closed gene

>SE2710139