SE2710140

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3473
  • Setaria italica
  • SE2710140
  • Tc1/Mariner
  • St3
  • scaffold_5:43961621-43961773
  • TA
  • TACTCCCTCCGTTCCAAAATGCAGGTCGTTTTGGCTTTTCTAGATACATAGATTTTGCTATGCACCTAGATATA

Secondary structure and sequence

TSD    TIR
5'



3' 
             -C       C                     A  C   G        A  CAC         AG
TACTCCCTCCGTT  CAAAATG AGGTCGTTTTGGCTTTTCTAG TA ATA ATTTTGCT TG   CTAGATATA  
|||||||||||||  ||||||| ||||||||||||||||||||| || ||| |||||||| ||   |||||||||   
ATGAGGGAGGCAA  GTTTTAC TCCAGCAAAACCGAAAAGATC AT TAT TAAAACGA AC   GATCTGTAT  
             AA       A                     C  A   A        A  ATA         TG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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