Plant MITE

SE2730147

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3480
Setaria italica
SE2730147
hAT
Hat10
scaffold_4:38196498-38196670
CTGCCGTG
GCCGTGCACTGGCGGAGCT

Secondary structure and sequence

TSD TIR

5'

3'

CT  C  -              AC   AT   CATA   -   ACGGCCCTCCCTACCTAAGCTAATTCTCCACTAGATAAACAGTAAAAA
  GC GT GCACTGGCGGAGCT  GTT  GGT    GAG GGC                                                
  || || ||||||||||||||  |||  |||    ||| |||                                                 
  TG CG CGTGACCGCCTCGA  TGA  CTG    TTT GTC                                                
 G  C  T              AC   --   ----   C   CCTCCGGTCAGATATCTTTACACCTAATTTGTAATTAGATGTCATGGC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2730147

CTGCCGTGCACTGGCGGAGCTACGTTATGGTCATAGAGGGCACGGCCCTCCCTACCTAAGCTAATTCTCCACTAGATAAACAGTAAAAACGGTACTGTAGATTAATGTTTAATCCACATTTCTATAGACTGGCCTCCCTGCTTTGTCAGTCAAGCTCCGCCAGTGCTGCCGTG

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