Plant MITE

SE2710149

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3482
Setaria italica
SE2710149
Tc1/Mariner
St8
scaffold_8:25647163-25647425
TA
TACTCCCTCCGTTCCAAATTATAAGTCATTCCAACTTTCTTGGAGAGTCAAACATTTTTATGTTTGACTAAAATTATAGAGAAAA

Secondary structure and sequence

TSD TIR

5'

3'

                                                    -      TAT           A     G  A   TCACAAAA       CCAC       ATA      GAAAATATATTT
TACTCCCTCCGTTCCAAATTATAAGTCATTCCAACTTTCTTGGAGAGTCAAA CATTTT   GTTTGACTAAA TTATA AG AAA        GTTTATG    CGAATAG   TACTAT            
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||   ||||||||||| ||||| || |||        |||||||    |||||||   ||||||            A
ATGAGGGAGGCAAGGTTTAATATTCAGTAAGGTTGAAAGAACCTCTCAGTTT GTAGAG   CAAACTGGTTT AATAT TT TTT        TAAGTAC    GTTTATC   ATGGTA            
                                                    C      -TT           A     G  A   CACGATTG       TATA       --C      ATCAAAGAAGTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2710149

TACTCCCTCCGTTCCAAATTATAAGTCATTCCAACTTTCTTGGAGAGTCAAACATTTTTATGTTTGACTAAAATTATAGAGAAAATCACAAAAGTTTATGCCACCGAATAGATATACTATGAAAATATATTTAATGAAGAAACTAATGGTACCTATTTGATATCATGAATGTTAGCACTTTATTGTATAAATTTGGTCAAACTTGAGATGCTTTGACTCTCCAAGAAAGTTGGAATGACTTATAATTTGGAACGGAGGGAGTA

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