Plant MITE

SE2710151

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3484
Setaria italica
SE2710151
Tc1/Mariner
St3
scaffold_4:10920209-10920359
TA
TACTCCCTCCGTCCCAAATTATAGGTCGTTTTGACTTTATTAGGTTCATAGATTTTGTTATGCACTTAGATATAGCCTATGTCTAGATGCATAATAATATCTATGTATCTAGAAAAATCAAAACGACCTATAATTTGGAACGGAGGGAGTA

Secondary structure and sequence

TSD TIR

5'

3'

            C                     C   A      T       T          C         G
TACTCCCTCCGT CCAAATTATAGGTCGTTTTGA TTT TTAGGT CATAGAT TTGTTATGCA TTAGATATA 
|||||||||||| ||||||||||||||||||||| ||| |||||| ||||||| |||||||||| ||||||||| C
ATGAGGGAGGCA GGTTTAATATCCAGCAAAACT AAA GATCTA GTATCTA AATAATACGT GATCTGTAT 
            A                     A   A      T       T          A         C

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

SE2710151

Basic info.

Secondary structure and sequence

MITE cluster

Closed gene

>SE2710151