SE2710153

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3486
  • Setaria italica
  • SE2710153
  • Tc1/Mariner
  • St18
  • scaffold_5:30174666-30174884
  • TA
  • TACTCCCTCCATCCCAAAATAAGTACACTTCTAGAGTTTGGG

Secondary structure and sequence

TSD    TIR
5'



3' 
          A    AA       A  C              TGAAAAGA    T  T    AAAAATTACATATATA    - A    GTTGTAATCATTACACTTTGGGAGGAGAGA
TACTCCCTCC TCCC  AATAAGT CA TTCTAGAGTTTGGG        TCAA GT AGTG                TCCC T TAAA                              
|||||||||| ||||  ||||||| || ||||||||||||||        |||| || ||||                |||| | ||||                              A
ATGAGGGAGG AGGG  TTATTCA GT AAGATCTCAAATTT        GGTT TA TCAC                GTGT G ATCT                              
          C    -A       C  A              -TAAACAA    T  T    ----------------    A -    TTACCCTGGTAGATCAACATAAAAAGATGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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