SE2710154

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3487
  • Setaria italica
  • SE2710154
  • Tc1/Mariner
  • St3
  • scaffold_4:1328189-1328317
  • TA
  • TACTCCCTCCGTTCCAAATTGTAGGTCGTTTTAGCTTTTTAAGGTTCATAGATATTATTATG

Secondary structure and sequence

TSD    TIR
5'



3' 
                                A       AA   TCA       -TAT    CATC
TACTCCCTCCGTTCCAAATTGTAGGTCGTTTT GCTTTTT  GGT   TAGATAT    TATG    
|||||||||||||||||||||||||||||||| |||||||  |||   |||||||    ||||     
ATGAGGGAGGCAAGGTTTAACATCTAGCAAAA CGAAAAG  TCG   ATCTATA    ATAC    
                                C       -A   ---       TCAC    AGAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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