Plant MITE

SE2750158

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3491
Setaria italica
SE2750158
PIF/harbinger
To21
scaffold_3:993592-993822
TTA
AGGGCCAGTTTGGCAGGACTCC

Secondary structure and sequence

TSD TIR

5'

3'

TT     CAG         A    -     --      CGTGCGCTTACCAAAGCACGGAGGAGCCGGAGCCGCACCAAACGGCATTGACCGCGGAGCCATTTTTTGGCATATTTGG
  AGGGC   TTTGGCAGG CTCC GGCTC  CGGCTC                                                                               
  |||||   ||||||||| |||| |||||  ||||||                                                                                
  TCCCG   AAACCGTCC GAGG GCGCT  CCGAGG                                                                               
AT     AGG         C    A     CC      AGCACGCCTCGGCCTCGGCCTCGGCGCCTCGGTGAAAAAACCCGAAGAGGTACGTCCGGATTTTGCCGAGGCCGAGGAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2750158

TTAGGGCCAGTTTGGCAGGACTCCGGCTCCGGCTCCGTGCGCTTACCAAAGCACGGAGGAGCCGGAGCCGCACCAAACGGCATTGACCGCGGAGCCATTTTTTGGCATATTTGGGAGGAGCCGGAGCCGTTTTAGGCCTGCATGGAGAAGCCCAAAAAAGTGGCTCCGCGGCTCCGGCTCCGGCTCCGCACGAGGAGCCCCTCGCGAGGAGCCCTGCCAAAGGAGCCCTTA

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