SE2740176

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3509
  • Setaria italica
  • SE2740176
  • CACTA
  • Ca1
  • scaffold_9:49904542-49904942
  • TGC
  • GCCACTAGTAGAGAATTAGCTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
T  -                 -    CGATGCGTCC      -   ------   GTTTAAATTAGCCCGGGATAAAAGGTTTACCAACCGGGATTAAAGCTCTGTCACTGGTGGGGGGCTCACCAACCGGGACCTTTTATCCCGGTTGCAAAGGTTAGTGTGAAAAAAGATCCTGAGAGGCATTTTATCCCGGTTTGAAGCAGCGCCG
 GC CACTAGTAGAGAATTAG CTTT          CTTTTT GTC      CCG                                                                                                                                                          
 || ||||||||||||||||| ||||          |||||| |||      |||                                                                                                                                                          G
 CG GTGATCATCTCTTAATC GAAA          AGGGTC ACC      CGT                                                                                                                                                          
   T                 C    --------TC      A   ATCCCA   TTATATGGCTTTTAGGTAGGCCCTATTTGGTTGGCCCTGTTTTCCACCCTAGAAAATAGGGCCCAGTGAGCCTGTTTCTGGGGGAAAATAGGGCCAACCATAATGGTTGGCCCTATTTTACCCAGTGGTGCCGGCCGCGACGTTTTTTTTTTAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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