SE2710178

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3511
  • Setaria italica
  • SE2710178
  • Tc1/Mariner
  • St3
  • scaffold_6:27155402-27155552
  • TA
  • TACTCCCTCCGTTCCAAATTGTAGGTCGTTTTGGCTTTTCTAGGTTGATAG

Secondary structure and sequence

TSD    TIR
5'



3' 
                                             TG    ATATTA             C   C
TACTCCCTCCGTTCCAAATTGTAGGTCGTTTTGGCTTTTCTAGGT  ATAG      TTATGCATTTAGA ATA 
|||||||||||||||||||||||||||||||||||||||||||||  ||||      ||||||||||||| ||| A
ATGAGGGAGGCAAGGTTTAACATCCAGCAAAACTGAAAAGATCCA  TATC      AATATGTGAATCT TAT 
                                             CA    AAAAAC             A   C
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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